| Phylum | Class | Order | Family | Genus | Species | RefIntense Num | Refseq Num | Source |
|---|---|---|---|---|---|---|---|---|
| Proteobacteria | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Shigella | Shigella boydii | 1 | 103 | HMP |
| Proteobacteria | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Shigella | Shigella flexneri | 2 | 738 | HMP |
| Proteobacteria | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Shigella | Shigella sonnei | 1 | 1399 | HMP |
| Firmicutes | Clostridia | Eubacteriales | Lachnospiraceae | Shuttleworthia | Shuttleworthia satelles | 1 | 1 | HMP |
| Proteobacteria | Betaproteobacteria | Nitrosomonadales | Gallionellaceae | Sideroxydans | Sideroxydans lithotrophicus | 1 | 1 | HMP |
| Proteobacteria | Betaproteobacteria | Neisseriales | Neisseriaceae | Simonsiella | Simonsiella muelleri | 1 | 3 | HMP |
| Proteobacteria | Alphaproteobacteria | Hyphomicrobiales | Rhizobiaceae | Sinorhizobium | Sinorhizobium fredii | 1 | 20 | HMP |
| Proteobacteria | Alphaproteobacteria | Hyphomicrobiales | Rhizobiaceae | Sinorhizobium | Sinorhizobium medicae | 1 | 51 | HMP |
| Proteobacteria | Alphaproteobacteria | Hyphomicrobiales | Rhizobiaceae | Sinorhizobium | Sinorhizobium meliloti | 1 | 241 | HMP |
| Actinobacteria | Coriobacteriia | Eggerthellales | Eggerthellaceae | Slackia | Slackia exigua | 2 | 4 | HMP/UHGG |