| Species | RefIntense Num | Refseq Num | Source |
|---|---|---|---|
| Enterococcus pallens | 1 | 3 | MGYG |
| Enterococcus raffinosus | 1 | 10 | MGYG |
| Enteroscipio rubneri | 1 | 2 | MGYG |
| Erwinia amylovora | 2 | 236 | HMP |
| Erythrobacter litoralis | 1 | 3 | HMP |
| Escherichia albertii | 2 | 162 | HMP/MGYG |
| Escherichia coli | 36 | 29876 | HMP/MGYG |
| Escherichia fergusonii | 2 | 138 | HMP/MGYG |
| Escherichia marmotae | 1 | 56 | MGYG |
| Eubacterium callanderi | 1 | 17 | MGYG |