RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera massiliensis 1 14 UHGG
Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Oleidesulfovibrio Oleidesulfovibrio alaskensis 1 2 HMP
Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus lactis 1 4 UHGG
Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus thiaminolyticus 1 7 UHGG
Proteobacteria Betaproteobacteria Burkholderiales Sutterellaceae Parasutterella Parasutterella excrementihominis 1 15 UHGG
Firmicutes Tissierellia Tissierellales Peptoniphilaceae Parvimonas Parvimonas micra 2 13 HMP/UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus pentosaceus 2 95 HMP/UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola barnesiae 1 5 UHGG
Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis 2 82 HMP/UHGG
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella bivia 2 8 HMP/UHGG