RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Clostridia Eubacteriales Syntrophomonadaceae Syntrophomonas Syntrophomonas wolfei 1 2 HMP
Thermotogae Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga petrophila 2 2 HMP
Firmicutes Bacilli Bacillales Bacillaceae Weizmannia Weizmannia coagulans 2 47 HMP/UHGG
Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax avenae 1 17 HMP
Actinobacteria Actinomycetia Actinomycetales Actinomycetaceae Actinomyces Actinomyces urogenitalis 2 5 HMP/UHGG
Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter segnis 1 10 UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Anaerotignum Anaerotignum lactatifermentans 1 6 UHGG
Firmicutes Clostridia Eubacteriales Oscillospiraceae Anaerotruncus Anaerotruncus rubiinfantis 1 4 UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides finegoldii 2 24 HMP/UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides salyersiae 1 54 UHGG