RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Actinobacteria Actinomycetia Streptomycetales Streptomycetaceae Streptomyces Streptomyces lividans 1 3 HMP
Firmicutes Clostridia Eubacteriales Lachnospiraceae Faecalicatena Faecalicatena contorta 1 13 UHGG
Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae Rickettsiella Rickettsiella grylli 1 2 HMP
Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus jensenii 8 61 HMP/UHGG
Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pseudopneumoniae 1 119 UHGG
Actinobacteria Actinomycetia Streptomycetales Streptomycetaceae Streptomyces Streptomyces albus 2 18 HMP/UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus 7 284 HMP/UHGG
Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia rickettsii 1 15 HMP
Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio mediterranei 1 14 HMP
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotellamassilia Prevotellamassilia timonensis 1 2 UHGG