RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Rikenella Rikenella microfusus 1 2 UHGG
Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei 1 99 HMP
Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Buchnera Buchnera aphidicola 4 69 HMP
Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei 2 1708 HMP
Actinobacteria Actinomycetia Streptomycetales Streptomycetaceae Streptomyces Streptomyces griseus 2 27 HMP
Chlamydiae Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae 1 4 HMP
Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio harveyi 1 57 HMP
Proteobacteria Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus asymbiotica 2 2 HMP
Firmicutes Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus flavefaciens 1 11 HMP
Bacteroidota Unknown Bacteroidetes Order II. Incertae sedis Rhodothermaceae Rhodothermus Rhodothermus marinus 1 6 HMP