RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia 1 479 HMP
Proteobacteria Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium etli 4 9 HMP
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron 3 202 HMP/UHGG
Proteobacteria Gammaproteobacteria Cellvibrionales Cellvibrionaceae Cellvibrio Cellvibrio japonicus 1 4 HMP
Proteobacteria Alphaproteobacteria Hyphomicrobiales Methylocystaceae Methylosinus Methylosinus trichosporium 1 2 HMP
Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida 5 214 HMP/UHGG
Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Scardovia Scardovia inopinata 1 3 HMP
Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter xylosoxidans 1 142 UHGG
Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Alicycliphilus Alicycliphilus denitrificans 1 6 HMP
Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia vietnamiensis 1 129 HMP