RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis excentricus 1 2 HMP
Actinobacteria Actinomycetia Micrococcales Jonesiaceae Jonesia Jonesia denitrificans 1 4 HMP
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Lelliottia Lelliottia nimipressuralis 1 4 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter malonaticus 1 56 UHGG
Actinobacteria Actinomycetia Actinomycetales Actinomycetaceae Flaviflexus Flaviflexus massiliensis 1 2 UHGG
Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis 4 116 HMP
Actinobacteria Coriobacteriia Eggerthellales Eggerthellaceae Gordonibacter Gordonibacter pamelaeae 1 6 UHGG
Firmicutes Clostridia Eubacteriales Clostridiaceae Hungatella Hungatella hathewayi 3 25 HMP/UHGG
Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Rhizorhabdus Rhizorhabdus wittichii 1 2 HMP
Firmicutes Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus gauvreauii 1 2 UHGG