RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Pluralibacter Pluralibacter gergoviae 1 21 UHGG
Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fulva 1 75 UHGG
Actinobacteria Actinomycetia Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas timonensis 1 2 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter portucalensis 3 85 HMP/UHGG
Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus phocaensis 1 2 UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis 6 317 HMP/UHGG
Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae 1 12 HMP
Actinobacteria Actinomycetia Corynebacteriales Corynebacteriaceae Corynebacterium Corynebacterium accolens 2 7 HMP
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia fergusonii 2 138 HMP/UHGG
Firmicutes Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus callidus 1 4 UHGG