| Species | RefIntense Num | Refseq Num | Source |
|---|---|---|---|
| Dinoroseobacter shibae | 1 | 3 | HMP |
| Dokdonia sp. MED134 | 1 | 1 | HMP |
| Dorea formicigenerans | 2 | 53 | HMP/MGYG |
| Dorea longicatena | 3 | 58 | HMP/MGYG |
| Duodenibacillus massiliensis | 1 | 1 | MGYG |
| Dyadobacter fermentans | 1 | 2 | HMP |
| Dysgonomonas capnocytophagoides | 1 | 2 | MGYG |
| Dysgonomonas gadei | 1 | 2 | MGYG |
| Dysgonomonas mossii | 1 | 6 | MGYG |
| Edwardsiella ictaluri | 1 | 11 | HMP |