| Species | RefIntense Num | Refseq Num | Source |
|---|---|---|---|
| Edwardsiella tarda | 4 | 23 | HMP/MGYG |
| Eggerthella lenta | 2 | 84 | HMP/MGYG |
| Ehrlichia canis | 1 | 5 | HMP |
| Ehrlichia chaffeensis | 2 | 8 | HMP |
| Ehrlichia ruminantium | 1 | 26 | HMP |
| Eikenella corrodens | 2 | 21 | HMP/MGYG |
| Eisenbergiella massiliensis | 1 | 3 | MGYG |
| Eisenbergiella tayi | 1 | 9 | MGYG |
| Elusimicrobium minutum | 1 | 1 | HMP |
| Emergencia timonensis | 1 | 6 | MGYG |