RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Odoribacter splanchnicus 1 40 UHGG
Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Parascardovia Parascardovia denticolens 2 4 HMP/UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium atrosepticum 1 18 HMP
Firmicutes Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici 3 217 HMP/UHGG
Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter asymbioticus 1 10 HMP
Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas uenonis 3 3 HMP/UHGG
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella copri 3 180 HMP/UHGG
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella disiens 1 7 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus mirabilis 2 472 HMP/UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Roseburia Roseburia hominis 1 8 UHGG