RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Proteobacteria Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseobacter Roseobacter denitrificans 1 3 HMP
Actinobacteria Actinomycetia Micrococcales Micrococcaceae Rothia Rothia dentocariosa 3 16 HMP/UHGG
Actinobacteria Actinomycetia Actinomycetales Actinomycetaceae Schaalia Schaalia odontolytica 2 11 HMP
Firmicutes Clostridia Eubacteriales Lachnospiraceae Sellimonas Sellimonas intestinalis 1 16 UHGG
Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus argenteus 1 219 UHGG
Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus 31 14566 HMP/UHGG
Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mutans 3 260 HMP/UHGG
Proteobacteria Betaproteobacteria Burkholderiales Sutterellaceae Sutterella Sutterella parvirubra 1 2 UHGG
Cyanobacteria Unknown Synechococcales Synechococcaceae Synechococcus Synechococcus elongatus 1 9 HMP
Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus 1 1851 UHGG