RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis 5 186 HMP/UHGG
Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius 2 179 HMP/UHGG
Proteobacteria Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium violaceum 1 29 HMP
Firmicutes Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium merdae 1 2 UHGG
Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus lacrimalis 2 3 HMP/UHGG
Firmicutes Negativicutes Acidaminococcales Acidaminococcaceae Phascolarctobacterium Phascolarctobacterium succinatutens 2 3 UHGG
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella salivae 1 7 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Atlantibacter Atlantibacter hermannii 1 11 UHGG
Spirochaetes Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia hermsii 1 11 HMP
Proteobacteria Gammaproteobacteria Cardiobacteriales Cardiobacteriaceae Cardiobacterium Cardiobacterium valvarum 1 3 UHGG