RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Actinobacteria Coriobacteriia Coriobacteriales Coriobacteriaceae Collinsella Collinsella tanakaei 1 11 UHGG
Proteobacteria Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia psychrerythraea 1 3 HMP
Chloroflexi Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalococcoides Dehalococcoides mccartyi 4 30 HMP
Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae Dysgonomonas Dysgonomonas gadei 1 2 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella quasipneumoniae 1 740 UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus mucosae 1 15 UHGG
Proteobacteria Alphaproteobacteria Maricaulales Maricaulaceae Maricaulis Maricaulis maris 1 2 HMP
Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus ihuae 1 2 UHGG
Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio coralliilyticus 1 32 HMP
Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Zunongwangia Zunongwangia profunda 1 2 HMP