RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Actinobacteria Actinomycetia Corynebacteriales Corynebacteriaceae Corynebacterium Corynebacterium aurimucosum 2 36 UHGG
Chrysiogenetes Chrysiogenetes Chrysiogenales Chrysiogenaceae Desulfurispirillum Desulfurispirillum indicum 1 2 HMP
Actinobacteria Coriobacteriia Eggerthellales Eggerthellaceae Eggerthella Eggerthella lenta 2 84 HMP/UHGG
Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia ruminantium 1 26 HMP
Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus casseliflavus 2 86 HMP/UHGG
Actinobacteria Actinomycetia Actinomycetales Actinomycetaceae Fannyhessea Fannyhessea vaginae 2 4 HMP/UHGG
Actinobacteria Actinomycetia Frankiales Frankiaceae Frankia Frankia casuarinae 1 4 HMP
Firmicutes Clostridia Eubacteriales Unknown Gemmiger Gemmiger formicilis 1 10 UHGG
Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Gramella Gramella forsetii 1 2 HMP
Euryarchaeota Halobacteria Haloferacales Halorubraceae Halorubrum Halorubrum lipolyticum 1 2 UHGG