RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus phoceensis 1 2 UHGG
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella amnii 1 5 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia rettgeri 3 168 HMP/UHGG
Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens 2 261 HMP
Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae 3 606 HMP
Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia typhi 1 4 HMP
Firmicutes Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus bromii 3 20 UHGG
Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus xylosus 2 89 UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Weissella Weissella paramesenteroides 2 36 HMP/UHGG
Actinobacteria Actinomycetia Actinomycetales Actinomycetaceae Actinomyces Actinomyces viscosus 1 3 UHGG