RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Clostridia Eubacteriales Desulfitobacteriaceae Desulfitobacterium Desulfitobacterium hafniense 2 8 HMP/UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella variicola 3 587 HMP/UHGG
Actinobacteria Actinomycetia Micrococcales Micrococcaceae Micrococcus Micrococcus luteus 3 110 HMP/UHGG
Firmicutes Negativicutes Selenomonadales Selenomonadaceae Mitsuokella Mitsuokella multacida 2 4 HMP/UHGG
Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium aromaticivorans 1 2 HMP
Actinobacteria Actinomycetia Micrococcales Micrococcaceae Rothia Rothia aeria 1 7 UHGG
Proteobacteria Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas rivipollensis 1 7 UHGG
Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes putredinis 2 10 HMP/UHGG
Actinobacteria Actinomycetia Corynebacteriales Corynebacteriaceae Corynebacterium Corynebacterium diphtheriae 1 355 HMP
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter turicensis 1 12 HMP