RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus saniviri 1 4 UHGG
Firmicutes Clostridia Eubacteriales Clostridiaceae Massilioclostridium Massilioclostridium coli 1 2 UHGG
Firmicutes Tissierellia Tissierellales Peptoniphilaceae Murdochiella Murdochiella massiliensis 1 2 UHGG
Actinobacteria Actinomycetia Corynebacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium 2 246 HMP/UHGG
Actinobacteria Actinomycetia Corynebacteriales Mycobacteriaceae Mycobacterium Mycobacterium ulcerans 1 11 HMP
Actinobacteria Actinomycetia Corynebacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium vanbaalenii 1 3 HMP
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Paraprevotella Paraprevotella xylaniphila 1 3 UHGG
Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus obesi 1 2 UHGG
Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas endodontalis 2 3 HMP/UHGG
Actinobacteria Actinomycetia Corynebacteriales Nocardiaceae Prescottella Prescottella equi 1 74 HMP