RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Actinobacteria Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter xylanophilus 1 3 HMP
Firmicutes Negativicutes Acidaminococcales Acidaminococcaceae Acidaminococcus Acidaminococcus fermentans 2 6 HMP/UHGG
Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax citrulli 1 14 HMP
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides intestinalis 3 33 HMP/UHGG
Proteobacteria Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella parapertussis 1 94 HMP
Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni 8 2297 HMP/UHGG
Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Dielma Dielma fastidiosa 1 4 UHGG
Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Moorella Moorella thermoacetica 1 16 HMP
Proteobacteria Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia liquefaciens 1 25 UHGG
Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio orientalis 1 2 HMP