RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus antri 2 5 HMP/UHGG
Firmicutes Bacilli Bacillales Bacillaceae Massilibacterium Massilibacterium senegalense 1 2 UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Murimonas Murimonas intestini 1 4 UHGG
Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus polymyxa 1 85 UHGG
Firmicutes Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus harei 3 8 UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola massiliensis 2 17 UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola plebeius 3 25 HMP/UHGG
Actinobacteria Coriobacteriia Eggerthellales Eggerthellaceae Phoenicibacter Phoenicibacter congonensis 1 2 UHGG
Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas luteola 1 7 UHGG
Firmicutes Bacilli Bacillales Thermoactinomycetaceae Risungbinella Risungbinella massiliensis 1 2 UHGG