RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Scardovia Scardovia wiggsiae 1 2 UHGG
Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus carnosus 1 22 HMP
Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus vestibularis 2 14 UHGG
Firmicutes Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus teuberi 1 2 UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides nordii 1 14 UHGG
Actinobacteria Coriobacteriia Coriobacteriales Coriobacteriaceae Enorma Enorma massiliensis 2 4 UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum 2 708 HMP
Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus nepalensis 1 21 UHGG
Firmicutes Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium butyricum 2 55 HMP/UHGG
Firmicutes Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens 8 400 HMP/UHGG