RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium beijerinckii 1 237 HMP
Actinobacteria Actinomycetia Corynebacteriales Corynebacteriaceae Corynebacterium Corynebacterium kefirresidentii 1 7 UHGG
Bacteroidota Cytophagia Cytophagales Spirosomaceae Dyadobacter Dyadobacter fermentans 1 2 HMP
Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus caccae 1 4 UHGG
Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Holdemanella Holdemanella biformis 2 13 HMP/UHGG
Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Intestinibacter Intestinibacter bartlettii 2 14 HMP/UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Lachnoanaerobaculum Lachnoanaerobaculum saburreum 1 3 UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus apis 1 6 UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus buchneri 2 27 HMP/UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc gelidum 1 51 HMP