RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus lutetiensis 1 47 UHGG
Proteobacteria Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrooxidans 1 23 HMP
Actinobacteria Actinomycetia Actinomycetales Actinomycetaceae Actinobaculum Actinobaculum massiliense 1 2 UHGG
Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter aphrophilus 1 22 HMP
Proteobacteria Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri 2 79 HMP/UHGG
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Alloprevotella Alloprevotella tannerae 2 5 HMP/UHGG
Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus smithii 1 4 UHGG
Actinobacteria Actinomycetia Geodermatophilales Geodermatophilaceae Blastococcus Candidatus Blastococcus massiliensis 1 2 UHGG
Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hyointestinalis 1 43 UHGG
Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeovibrioides 1 5 HMP