RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Proteobacteria Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter ursingii 1 50 UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Anaerostipes Anaerostipes caccae 2 24 HMP/UHGG
Firmicutes Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium ljungdahlii 1 3 HMP
Firmicutes Negativicutes Veillonellales Veillonellaceae Dialister Dialister pneumosintes 1 2 UHGG
Fusobacteria Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium 3 8 HMP/UHGG
Firmicutes Bacilli Bacillales Unknown Gemella Gemella morbillorum 1 4 UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Lachnoclostridium Lachnoclostridium phytofermentans 2 4 HMP/UHGG
Spirochaetes Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira biflexa 1 7 HMP
Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptacetobacter Peptacetobacter hiranonis 2 3 HMP/UHGG
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella ruminicola 1 10 HMP