RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus cateniformis 1 8 UHGG
Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis 17 2214 HMP/UHGG
Firmicutes Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium ventriosum 2 13 HMP/UHGG
Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter acinonychis 1 8 HMP
Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus hominis 1 3 UHGG
Firmicutes Clostridia Eubacteriales Clostridiaceae Lactonifactor Lactonifactor longoviformis 1 6 UHGG
Proteobacteria Deltaproteobacteria Desulfovibrionales Desulfovibrionaceae Lawsonia Lawsonia intracellularis 1 8 HMP
Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria innocua 2 108 HMP/UHGG
Actinobacteria Coriobacteriia Coriobacteriales Coriobacteriaceae Senegalimassilia Senegalimassilia anaerobia 1 3 UHGG
Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes 2 2190 HMP