RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Clostridia Eubacteriales Lachnospiraceae Enterocloster Enterocloster asparagiformis 2 3 HMP/UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus penneri 2 9 HMP/UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides congonensis 1 3 UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Dorea Dorea formicigenerans 2 53 HMP/UHGG
Elusimicrobia Endomicrobia Endomicrobiales Endomicrobiaceae Endomicrobium Candidatus Endomicrobium trichonymphae 1 2 HMP
Firmicutes Tissierellia Unknown Unknown Ezakiella Ezakiella coagulans 1 2 UHGG
Firmicutes Bacilli Bacillales Bacillaceae Neobacillus Neobacillus jeddahensis 1 2 UHGG
Actinobacteria Actinomycetia Propionibacteriales Propionibacteriaceae Nigerium Nigerium massiliense 1 2 UHGG
Firmicutes Bacilli Bacillales Bacillaceae Oceanobacillus Oceanobacillus caeni 1 3 UHGG
Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus antibioticophila 1 3 UHGG