RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella denticola 1 14 UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Roseburia Roseburia intestinalis 2 17 HMP/UHGG
Proteobacteria Gammaproteobacteria Cellvibrionales Cellvibrionaceae Saccharophagus Saccharophagus degradans 1 2 HMP
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella bongori 1 26 UHGG
Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas massiliensis 1 2 UHGG
Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Amedibacillus Amedibacillus dolichus 2 5 HMP/UHGG
Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus timonensis 1 3 UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides cutis 1 2 UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Blautia Blautia producta 1 16 UHGG
Proteobacteria Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter vibrioides 1 9 HMP