RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Spirochaetes Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hyodysenteriae 1 58 HMP
Proteobacteria Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya parazeae 1 2 HMP
Fusobacteria Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gonidiaformans 3 4 HMP/UHGG
Actinobacteria Coriobacteriia Coriobacteriales Atopobiaceae Lancefieldella Lancefieldella rimae 2 2 HMP/UHGG
Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides bouchesdurhonensis 1 2 UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola coprocola 2 11 HMP/UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Roseburia Roseburia inulinivorans 2 14 HMP/UHGG
Thermotogae Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga neapolitana 1 2 HMP
Firmicutes Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella seminalis 1 3 UHGG
Firmicutes Bacilli Bacillales Bacillaceae Alkalihalobacillus Alkalihalobacillus alcalophilus 1 2 UHGG