RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc mesenteroides 2 111 HMP/UHGG
Firmicutes Bacilli Bacillales Staphylococcaceae Mammaliicoccus Mammaliicoccus lentus 1 24 UHGG
Firmicutes Negativicutes Selenomonadales Selenomonadaceae Megamonas Megamonas funiformis 1 13 UHGG
Firmicutes Bacilli Bacillales Staphylococcaceae Nosocomiicoccus Nosocomiicoccus massiliensis 1 3 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea brenneri 1 17 UHGG
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella veroralis 2 4 HMP/UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia alcalifaciens 4 38 HMP/UHGG
Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter capsulatus 1 14 HMP
Firmicutes Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus champanellensis 1 3 UHGG
Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio furnissii 2 21 HMP/UHGG