RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Tenericutes Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii 1 16 HMP
Firmicutes Clostridia Eubacteriales Lachnospiraceae Anaerocolumna Anaerocolumna aminovalerica 1 3 UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides caccae 2 78 HMP/UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides clarus 1 13 UHGG
Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum 1 95 UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Blautia Blautia hansenii 2 4 HMP/UHGG
Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas testosteroni 2 18 HMP
Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia acidovorans 1 19 HMP
Proteobacteria Gammaproteobacteria Cardiobacteriales Cardiobacteriaceae Dichelobacter Dichelobacter nodosus 1 4 HMP
Proteobacteria Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya chrysanthemi 1 7 HMP