RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Proteobacteria Gammaproteobacteria Enterobacterales Hafniaceae Edwardsiella Edwardsiella ictaluri 1 11 HMP
Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium lindanitolerans 1 2 UHGG
Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Massilimicrobiota Massilimicrobiota timonensis 1 3 UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola coprophilus 2 7 HMP/UHGG
Firmicutes Bacilli Bacillales Bacillaceae Virgibacillus Virgibacillus massiliensis 1 4 UHGG
Fusobacteria Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum 2 12 HMP/UHGG
Verrucomicrobia Verrucomicrobiae Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila 5 230 HMP/UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus farciminis 1 6 UHGG
Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus avium 1 42 UHGG
Fusobacteria Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum 5 8 HMP/UHGG