RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Bacilli Bacillales Paenibacillaceae Aneurinibacillus Aneurinibacillus aneurinilyticus 1 3 UHGG
Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus durans 1 132 UHGG
Fusobacteria Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium ulcerans 2 9 HMP/UHGG
Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Holdemania Holdemania massiliensis 1 8 UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus ruminis 2 46 HMP/UHGG
Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides johnsonii 2 10 HMP/UHGG
Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia canadensis 1 2 HMP
Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acetobacter Acetobacter pasteurianus 1 28 HMP
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides oleiciplenus 1 3 UHGG
Firmicutes Bacilli Bacillales Paenibacillaceae Brevibacillus Brevibacillus brevis 1 17 HMP