RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium jeddahense 1 5 UHGG
Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia chaffeensis 2 8 HMP
Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus asini 1 6 UHGG
Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus dispar 1 4 UHGG
Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium 13 2801 HMP/UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius 4 198 HMP/UHGG
Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes 14 4444 HMP/UHGG
Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae 2 3 HMP/UHGG
Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Novacetimonas Novacetimonas hansenii 1 12 HMP
Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus ihumii 1 2 UHGG