RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia canis 1 5 HMP
Firmicutes Tissierellia Tissierellales Peptoniphilaceae Finegoldia Finegoldia magna 6 27 HMP/UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Loigolactobacillus Loigolactobacillus coryniformis 1 12 UHGG
Candidatus Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Methanomassiliicoccus Candidatus Methanomassiliicoccus intestinalis 1 2 UHGG
Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium spiritivorum 2 7 HMP
Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus gordonii 2 84 HMP/UHGG
Actinobacteria Actinomycetia Streptosporangiales Nocardiopsaceae Thermobifida Thermobifida fusca 1 5 HMP
Proteobacteria Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter radioresistens 3 44 HMP/UHGG
Firmicutes Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus prevotii 3 3 HMP/UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Blautia Blautia hydrogenotrophica 2 3 HMP/UHGG