RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Spirochaetes Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira pilosicoli 2 25 HMP/UHGG
Actinobacteria Actinomycetia Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas massiliensis 1 2 UHGG
Actinobacteria Coriobacteriia Coriobacteriales Coriobacteriaceae Collinsella Collinsella ihumii 1 2 UHGG
Firmicutes Clostridia Eubacteriales Eubacteriales Family XIII. Incertae Sedis Emergencia Emergencia timonensis 1 6 UHGG
Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Faecalicoccus Faecalicoccus pleomorphus 1 9 UHGG
Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi 2 63 HMP/UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus agilis 1 29 UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus animalis 1 10 UHGG
Verrucomicrobia Verrucomicrobiae Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium spinosum 1 2 HMP
Proteobacteria Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter upsaliensis 2 43 HMP/UHGG