RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus raffinolactis 1 13 UHGG
Proteobacteria Gammaproteobacteria Aeromonadales Succinivibrionaceae Succinatimonas Succinatimonas hippei 1 3 UHGG
Firmicutes Negativicutes Acidaminococcales Acidaminococcaceae Acidaminococcus Acidaminococcus massiliensis 1 2 UHGG
Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes shahii 1 13 UHGG
Proteobacteria Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella bacilliformis 1 17 HMP
Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis 2 97 HMP/UHGG
Actinobacteria Actinomycetia Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium ruminantium 1 5 UHGG
Actinobacteria Coriobacteriia Coriobacteriales Coriobacteriaceae Collinsella Collinsella aerofaciens 47 80 HMP/UHGG
Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Criibacterium Criibacterium bergeronii 1 2 UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Enterocloster Enterocloster lavalensis 1 4 UHGG