RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus saprophyticus 1 150 HMP
Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equinus 2 45 HMP/UHGG
Spirochaetes Spirochaetia Spirochaetales Treponemataceae Treponema Treponema pallidum 1 96 HMP
Actinobacteria Actinomycetia Corynebacteriales Tsukamurellaceae Tsukamurella Tsukamurella paurometabola 1 5 HMP
Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio metoecus 2 29 HMP/UHGG
Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas oryzae 2 411 HMP
Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter vinelandii 1 5 HMP
Actinobacteria Actinomycetia Corynebacteriales Corynebacteriaceae Corynebacterium Corynebacterium efficiens 1 2 HMP
Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus acidophilus 2 62 HMP/UHGG
Firmicutes Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus murinus 1 56 UHGG