RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Proteobacteria Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella woodyi 1 2 HMP
Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus uberis 1 114 HMP
Proteobacteria Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter actinomycetemcomitans 2 176 HMP
Firmicutes Clostridia Eubacteriales Eubacteriaceae Anaerofustis Anaerofustis stercorihominis 2 7 HMP/UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Anaerostipes Anaerostipes hadrus 2 61 UHGG
Actinobacteria Actinomycetia Corynebacteriales Corynebacteriaceae Corynebacterium Corynebacterium ammoniagenes 2 6 HMP/UHGG
Actinobacteria Actinomycetia Corynebacteriales Corynebacteriaceae Corynebacterium Corynebacterium simulans 1 5 UHGG
Fibrobacteres Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter succinogenes 1 5 HMP
Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus thermodenitrificans 2 8 HMP
Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Holdemania Holdemania filiformis 2 4 HMP/UHGG