RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus wiedmannii 1 179 UHGG
Spirochaetes Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia turicatae 1 4 HMP
Proteobacteria Gammaproteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii 2 79 HMP
Actinobacteria Actinomycetia Micrococcales Dermabacteraceae Dermabacter Dermabacter hominis 1 3 UHGG
Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae Dysgonomonas Dysgonomonas mossii 1 6 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Hafniaceae Edwardsiella Edwardsiella tarda 4 23 HMP/UHGG
Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus gallinarum 2 88 HMP/UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia albertii 2 162 HMP/UHGG
Proteobacteria Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Hyphomicrobium Hyphomicrobium denitrificans 1 2 HMP
Firmicutes Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus rhamnosus 3 221 HMP/UHGG