RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus bicirculans 1 11 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica 17 11297 HMP/UHGG
Actinobacteria Coriobacteriia Eggerthellales Eggerthellaceae Slackia Slackia piriformis 1 2 UHGG
Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus warneri 2 126 HMP/UHGG
Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae 4 8745 HMP
Actinobacteria Actinomycetia Streptomycetales Streptomycetaceae Streptomyces Streptomyces coelicolor 1 8 HMP
Firmicutes Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella rogosae 1 2 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia kristensenii 3 33 HMP/UHGG
Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax temperans 1 3 UHGG
Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma phagocytophilum 1 27 HMP