RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides bouchesdurhonensis 1 2 UHGG
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris 2 63 HMP/UHGG
Bacteroidota Bacteroidia Bacteroidales Barnesiellaceae Barnesiella Barnesiella intestinihominis 1 8 UHGG
Actinobacteria Actinomycetia Corynebacteriales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum 1 74 HMP
Firmicutes Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor plautii 1 55 UHGG
Actinobacteria Coriobacteriia Eggerthellales Eggerthellaceae Gordonibacter Gordonibacter massiliensis 1 2 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Hafniaceae Hafnia Hafnia paralvei 1 34 UHGG
Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter macacae 1 2 UHGG
Cyanobacteria Unknown Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 1 52 HMP
Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea agglomerans 1 121 UHGG