RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria elongata 2 12 HMP/UHGG
Proteobacteria Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira multiformis 1 8 HMP
Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides goldsteinii 1 30 UHGG
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Paraprevotella Paraprevotella clara 1 3 UHGG
Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Peptostreptococcus Peptostreptococcus russellii 2 3 UHGG
Firmicutes Clostridia Eubacteriales Oscillospiraceae Pseudoflavonifractor Pseudoflavonifractor capillosus 2 4 HMP/UHGG
Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas entomophila 1 8 HMP
Proteobacteria Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia felis 1 3 HMP
Firmicutes Clostridia Eubacteriales Oscillospiraceae Ruthenibacterium Ruthenibacterium lactatiformans 1 24 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens 1 838 UHGG