RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas albilineans 1 18 HMP
Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes communis 1 6 UHGG
Firmicutes Bacilli Bacillales Bacillaceae Alkalihalobacillus Alkalihalobacillus clausii 1 39 HMP
Actinobacteria Actinomycetia Corynebacteriales Corynebacteriaceae Corynebacterium Corynebacterium glucuronolyticum 3 8 HMP/UHGG
Spirochaetes Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira borgpetersenii 1 117 HMP
Proteobacteria Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Microvirga Microvirga massiliensis 1 3 UHGG
Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides gordonii 1 5 UHGG
Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas mendocina 1 20 HMP
Proteobacteria Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Drosophila melanogaster 1 12 HMP
Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides xylanisolvens 3 167 HMP/UHGG