RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Actinobacteria Actinomycetia Micromonosporales Micromonosporaceae Salinispora Salinispora arenicola 1 12 HMP
Firmicutes Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium massiliodielmoense 1 2 UHGG
Firmicutes Clostridia Eubacteriales Oscillospiraceae Fournierella Fournierella massiliensis 1 4 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella oxytoca 1 236 UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Marvinbryantia Marvinbryantia formatexigens 2 3 HMP/UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea septica 1 4 UHGG
Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae 11 1558 HMP/UHGG
Proteobacteria Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lwoffii 1 43 HMP
Actinobacteria Actinomycetia Corynebacteriales Corynebacteriaceae Corynebacterium Corynebacterium genitalium 1 2 HMP
Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus amylovorus 1 16 UHGG