RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Actinobacteria Actinomycetia Corynebacteriales Nocardiaceae Rhodococcus Rhodococcus jostii 1 3 HMP
Spirochaetes Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella valaisiana 1 13 HMP
Firmicutes Clostridia Eubacteriales Lachnospiraceae Butyrivibrio Butyrivibrio crossotus 2 2 HMP/UHGG
Dictyoglomi Dictyoglomia Dictyoglomales Dictyoglomaceae Dictyoglomus Dictyoglomus thermophilum 1 2 HMP
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae 5 343 HMP/UHGG
Tenericutes Unknown Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma penetrans 1 2 HMP
Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia xenovorans 1 3 HMP
Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium profundum 2 3 HMP
Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas asaccharolytica 1 2 UHGG
Proteobacteria Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum 4 289 HMP