RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Bacilli Bacillales Bacillaceae Halalkalibacterium (ex Joshi et al. 2022) Halalkalibacterium halodurans 1 4 HMP
Firmicutes Clostridia Eubacteriales Lachnospiraceae Lachnospira Lachnospira eligens 2 22 HMP/UHGG
Tenericutes Unknown Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma arthritidis 1 2 HMP
Actinobacteria Coriobacteriia Coriobacteriales Atopobiaceae Olsenella Olsenella uli 1 6 HMP
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella jejuni 1 5 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter rodentium 1 7 HMP
Fibrobacteres Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter intestinalis 1 2 UHGG
Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter mustelae 1 3 HMP
Firmicutes Clostridia Eubacteriales Lachnospiraceae Lachnoclostridium Lachnoclostridium edouardi 1 2 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea vagans 1 16 UHGG