RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Actinobacteria Actinomycetia Streptomycetales Streptomycetaceae Streptomyces Streptomyces clavuligerus 1 29 HMP
Actinobacteria Actinomycetia Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus massiliensis 1 2 UHGG
Actinobacteria Actinomycetia Micrococcales Tropherymataceae Tropheryma Tropheryma whipplei 1 19 HMP
Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes onderdonkii 1 27 UHGG
Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus andreraoultii 1 2 UHGG
Firmicutes Clostridia Eubacteriales Lachnospiraceae Coprococcus Coprococcus eutactus 3 23 HMP/UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Yersiniaceae Nissabacter Nissabacter archeti 1 2 UHGG
Firmicutes Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus senegalensis 1 2 UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea ananatis 2 147 HMP/UHGG
Firmicutes Clostridia Eubacteriales Peptostreptococcaceae Clostridioides Clostridioides difficile 13 2282 HMP/UHGG