RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Firmicutes Clostridia Eubacteriales Christensenellaceae Christensenella Christensenella timonensis 1 2 UHGG
Actinobacteria Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei 1 2 HMP
Actinobacteria Actinomycetia Corynebacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum 1 9 HMP
Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus pallens 1 3 UHGG
Candidatus Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Methanomassiliicoccus Methanomassiliicoccus luminyensis 1 2 UHGG
Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella melaninogenica 3 30 HMP/UHGG
Synergistetes Synergistia Synergistales Synergistaceae Pyramidobacter Pyramidobacter piscolens 2 2 HMP/UHGG
Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Raoultella Raoultella ornithinolytica 1 114 UHGG
Proteobacteria Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium fredii 1 20 HMP
Proteobacteria Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium medicae 1 51 HMP