RI taxonomy and genome coverage

This table lists RI species with available PrimerBac primer records. Select a species to view its candidate primer pairs. The complete RI sequence and taxonomy files are available on the Download page.

Phylum Class Order Family Genus Species RI genomes RefSeq genomes Source
Fusobacteria Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae 1 5 UHGG
Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium johnsoniae 1 6 HMP
Firmicutes Bacilli Bacillales Bacillaceae Gracilibacillus Gracilibacillus massiliensis 1 2 UHGG
Firmicutes Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Caldanaerobacter Caldanaerobacter subterraneus 2 5 HMP
Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrophilum 1 253 HMP
Proteobacteria Gammaproteobacteria Chromatiales Chromatiaceae Allochromatium Allochromatium vinosum 1 2 HMP
Firmicutes Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus octavius 1 2 UHGG
Firmicutes Erysipelotrichia Erysipelotrichales Coprobacillaceae Catenibacterium Catenibacterium mitsuokai 2 18 HMP/UHGG
Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium limicola 1 2 HMP
Firmicutes Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium neonatale 1 11 UHGG